DYNAMIC NETWORK CSV CYTOSCAPE UPDATE

To export your network, you must first associate your NDEx account credentials with the CyNDEx-2 Browser by filling out the profile form (red oval in screenshot below). We recommend to provide as much metadata as possible, and always provide at least Version and Description attributes.

DYNAMIC NETWORK CSV CYTOSCAPE UPDATE

The Update Existing Network option enables you to overwrite the existing copy of the network (if you have permission to do so). You can set the name of your network by editing the Network Name attribute. When you select either option, the CyNDEx-2 Browser dialog will appear and enable you to provide various metadata to annotate the network and make it findable in subsequent NDEx searches. This option is closest to saving an entire Cytoscape session. If you later re-import this collection (using the Cytoscape Search bar), the entire collection will be loaded. The Collection to NDEx option saves all networks in the collection containing the currently selected network. If you later re-import this network (using the Cytoscape Search bar), only the single network you saved will be loaded. Such networks are suitable for processing by other applications and web services, as they contain only the nodes and edges in the selected network – other views and the nodes and edges unique to them are not written. The Network to NDEx option saves only the currently selected network to your NDEx account. To store a network, you must first create a free NDEx account, which you can easily do by visiting the NDEx Public Server website. You can use the NDEx public server to store your networks on the cloud, for sharing networks with collaborators, or to archive networks for publication.

The Network to NDEx and Collection to NDEx options are used to store a network on the public NDEx server. Network Data Exchange (NDEx) Public Database ¶

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